JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLYWCH1_chr16_2906931_2956208	0/0	t0058	2895	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0059	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0060	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0061	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0062	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0063	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0064	2893	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0065	2893	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0066	2893	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0067	2893	1	0	0	0	1	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0068	2893	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0069	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0070	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0071	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0072	2893	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0073	2893	1	0	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0074	2911	1	0	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0075	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0076	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0077	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0078	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0079	2893	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0080	2893	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0081	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0082	2893	1	0	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0083	2893	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0084	2893	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0085	2893	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0086	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0087	2893	1	0	0	0	1	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0088	2893	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0089	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	1/0	t0090	2893	1	0	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0091	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0092	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0093	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0094	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0095	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0096	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0097	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0098	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH2_chr16_2878215_2904365	1/0	t0001	568	83	7	10	54	4	7	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0002	570	77	22	18	25	6	6	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0003	568	64	2	7	41	0	14	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0004	568	59	15	20	15	1	8	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/1	t0005	569	22	7	7	2	5	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0006	568	21	16	4	0	0	1	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0007	570	17	0	7	8	0	2	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0008	570	8	8	0	0	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0009	567	7	2	1	4	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365