JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLYWCH2_chr16_2878215_2904365	0/0	t0010	567	7	1	2	4	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0011	568	5	0	0	5	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0012	569	4	0	1	3	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0013	569	4	4	0	0	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0014	569	3	3	0	0	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0015	568	2	0	0	2	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0016	567	2	0	1	0	1	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0017	568	2	0	0	2	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0018	570	1	0	0	0	1	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0019	567	1	0	0	1	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	t0020	568	1	1	0	0	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FMC1_chr7_139336337_139351328	1/0	t0001	673	235	11	55	131	9	28	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0002	674	101	27	15	42	6	11	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0003	675	56	47	6	2	1	0	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0004	675	10	8	0	1	0	1	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0005	674	3	1	0	2	0	0	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0006	673	2	0	0	0	0	2	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0007	675	1	1	0	0	0	0	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0008	674	1	1	0	0	0	0	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0009	673	1	0	0	1	0	0	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/1	t0010	674	1	0	0	0	0	0	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	t0011	673	1	0	0	1	0	0	copy fasta	FMC1	chr7	139336337	139351328
FMN1_chr15_32760544_33199714	0/0	t0001	9255	28	3	7	17	1	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/1	t0002	9256	12	1	3	4	1	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0003	9261	8	7	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0004	9256	7	3	4	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0005	9259	7	1	3	0	2	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	1/0	t0006	9252	7	6	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0007	9261	7	7	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0008	9256	7	0	3	1	1	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0009	9261	5	0	2	0	1	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0010	9256	5	1	1	3	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0011	9249	4	4	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0012	9252	4	4	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0013	9259	3	1	1	0	1	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0014	9257	3	0	0	3	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0015	9256	3	0	0	3	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0016	9256	3	0	1	0	1	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0017	9258	3	3	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0018	9253	3	0	0	2	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0019	9249	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0020	9259	2	0	0	0	0	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0021	9253	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0022	9251	2	0	2	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0023	9256	2	1	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0024	9257	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0025	9255	2	0	0	0	0	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0026	9253	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0027	9258	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0028	9256	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714