JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FMN1_chr15_32760544_33199714	0/0	t0079	9255	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0080	9251	1	0	0	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0081	9255	1	0	0	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0082	9253	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0083	9253	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0084	9254	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0085	9255	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0086	9253	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	t0087	9252	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN2_chr1_240086883_240480187	1/0	t0001	1261	67	33	12	14	3	4	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/1	t0002	1261	36	5	11	8	6	5	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0003	1262	31	6	9	12	2	2	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0004	1262	11	0	1	8	1	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0005	1261	8	8	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0006	1260	7	7	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0007	1261	6	6	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0008	1261	3	2	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0009	1261	3	2	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0010	1261	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	t0011	1261	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMNL1_chr17_45216885_45252318	1/1	t0001	701	342	75	66	147	14	38	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0002	701	18	2	9	7	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0003	701	7	7	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0004	702	5	0	0	5	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0005	701	5	0	0	5	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0006	701	2	2	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0007	701	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0008	701	1	0	1	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0009	701	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0010	701	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	t0011	701	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL2_chr2_152330174_152654826	0/0	t0001	2352	85	32	31	2	4	16	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0002	2352	59	19	14	15	3	8	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/1	t0003	2352	24	7	2	9	1	4	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0004	2352	5	5	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0005	2352	4	0	0	4	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0006	2352	3	3	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0007	2352	3	3	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0008	2356	3	0	0	3	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0009	2352	3	3	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0010	2352	2	2	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0011	2352	2	0	0	2	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0012	2352	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0013	2352	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	1/0	t0014	2352	1	0	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0015	2352	1	0	0	1	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0016	2352	1	0	1	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0017	2352	1	0	0	1	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	t0018	2352	1	0	0	1	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL3_chr12_49631499_49712405	1/1	t0001	9542	36	17	3	8	3	3	copy fasta	FMNL3	chr12	49631499	49712405