JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FMNL3_chr12_49631499_49712405	0/0	t0002	9543	14	5	1	5	0	3	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0003	9542	12	6	1	3	0	2	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0004	9543	9	7	2	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0005	9543	9	0	2	6	1	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0006	9542	5	5	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0007	9544	5	5	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0008	9546	5	5	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0009	9544	4	4	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0010	9543	4	4	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0011	9542	3	2	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0012	9542	2	0	1	0	1	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0013	9542	2	0	1	1	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0014	9544	2	0	0	2	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0015	9545	2	2	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0016	9542	2	1	0	1	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0017	9543	2	0	0	0	0	2	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0018	9542	1	0	0	0	0	1	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0019	9545	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0020	9546	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0021	9542	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0022	9542	1	0	0	0	0	1	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0023	9542	1	0	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0024	9542	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0025	9542	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0026	9542	1	0	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0027	9542	1	0	0	0	1	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0028	9542	1	0	0	1	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0029	9542	1	0	0	1	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0030	9542	1	0	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0031	9542	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0032	9542	1	0	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0033	9542	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0034	9543	1	0	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0035	9543	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0036	9543	1	0	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0037	9543	1	0	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0038	9543	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0039	9543	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0040	9543	1	0	0	1	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0041	9543	1	0	0	1	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0042	9545	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0043	9545	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0044	9541	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0045	9541	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0046	9545	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0047	9544	1	0	1	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0048	9545	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	t0049	9546	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMO1_chr1_171243494_171290961	1/1	t0001	554	115	15	23	62	3	10	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0002	554	61	39	6	3	1	12	copy fasta	FMO1	chr1	171243494	171290961