JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FMO1_chr1_171243494_171290961	0/0	t0003	554	49	7	9	27	1	5	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0004	554	23	2	4	10	1	6	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0005	554	20	18	0	2	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0006	554	18	0	7	9	0	2	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0007	554	11	4	1	3	0	3	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0008	554	4	4	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0009	554	3	3	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0010	554	2	0	0	2	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0011	554	2	0	0	2	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0012	554	2	2	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	t0013	554	2	2	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO2_chr1_171180300_171217686	0/1	t0001	3526	83	10	17	40	6	9	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0002	3526	60	13	10	24	1	12	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0003	3526	58	8	16	29	2	3	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0004	3526	58	11	0	33	2	12	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0005	3525	22	0	10	12	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0006	3526	20	15	2	1	2	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0007	3526	13	0	0	13	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0008	3526	9	9	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0009	3754	6	6	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0010	3526	5	0	0	5	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0011	3526	4	3	1	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0012	3527	4	4	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0013	3444	4	0	0	4	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0014	3526	4	0	0	4	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0015	3530	3	3	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0016	3526	3	3	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0017	3526	2	2	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0018	3526	1	0	0	0	0	1	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0019	3506	1	0	0	1	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0020	3526	1	1	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	1/0	t0021	3608	1	0	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0022	3526	1	0	0	0	0	1	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0023	3526	1	0	0	0	1	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0024	3530	1	1	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	t0025	3526	1	1	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO3_chr1_171085905_171122819	1/1	t0001	461	404	90	76	184	14	38	copy fasta	FMO3	chr1	171085905	171122819
FMO4_chr1_171309183_171347084	1/1	t0001	627	158	8	45	87	5	11	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0002	627	127	20	14	71	6	16	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0003	628	49	26	6	2	1	14	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0004	627	22	22	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0005	628	17	10	1	5	0	1	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0006	627	6	0	0	6	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0007	627	2	2	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0008	627	2	2	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0009	627	1	1	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0010	627	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	t0011	627	1	1	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO5_chr1_147181261_147230339	0/0	t0001	730	330	82	52	164	11	21	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	t0002	731	62	2	19	24	5	12	copy fasta	FMO5	chr1	147181261	147230339