JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FMO5_chr1_147181261_147230339	0/0	t0003	1047	8	2	2	0	2	2	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	t0004	1048	2	0	1	0	0	1	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	t0005	730	1	1	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	t0006	1047	1	0	0	0	0	1	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	t0007	1048	1	0	0	0	0	1	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	t0008	730	1	1	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMOD_chr1_203335628_203356122	0/0	t0001	1813	217	64	26	106	5	16	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0002	1813	153	2	28	107	2	14	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	1/1	t0003	1813	76	27	20	12	6	9	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0004	1813	5	0	1	2	0	2	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0005	1813	4	4	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0006	1813	3	0	1	0	0	2	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0007	1813	2	0	0	0	1	1	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0008	1813	2	0	0	0	2	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0009	1813	2	0	0	2	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0010	1813	2	0	0	0	0	2	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0011	1813	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0012	1813	1	1	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0013	1813	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0014	1813	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0015	1813	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0016	1813	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0017	1813	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0018	1813	1	0	0	0	0	1	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0019	1813	1	0	0	0	0	1	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	t0020	1813	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMR1NB_chrX_147976337_148031665	1/1	t0001	244	274	76	49	108	13	26	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1NB_chrX_147976337_148031665	0/0	t0002	244	1	1	0	0	0	0	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1_chrX_147906919_147956125	0/0	t0001	2570	82	11	15	47	2	7	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/1	t0002	2573	59	6	12	25	5	10	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0003	2570	15	5	2	8	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	1/0	t0004	2543	7	0	4	1	1	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0005	2591	6	0	0	6	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0006	2579	6	0	0	6	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0007	2573	6	2	2	2	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0008	2576	6	6	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0009	2570	6	5	1	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0010	2570	5	3	2	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0011	2577	5	5	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0012	2573	4	4	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0013	2570	4	0	0	0	1	3	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0014	2549	4	4	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0015	2573	4	3	1	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0016	2549	4	3	1	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0017	2573	4	0	0	4	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0018	2552	3	0	1	1	1	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0019	2552	3	0	2	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0020	2573	2	0	0	2	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0021	2582	2	0	1	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0022	2570	2	0	1	0	0	1	copy fasta	FMR1	chrX	147906919	147956125