JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FMR1_chrX_147906919_147956125	0/0	t0023	2555	2	0	0	2	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0024	2576	2	1	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0025	2577	2	2	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0026	2573	2	0	0	1	1	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0027	2570	2	0	1	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0028	2576	2	0	0	0	1	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0029	2555	2	0	2	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0030	2570	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0031	2600	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0032	2594	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0033	2590	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0034	2618	1	0	1	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0035	2573	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0036	2569	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0037	2571	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0038	2576	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0039	2570	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0040	2591	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0041	2657	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0042	2615	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0043	2609	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0044	2585	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0045	2576	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0046	2573	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0047	2570	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0048	2570	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0049	2567	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0050	2558	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0051	2552	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0052	2576	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0053	2576	1	0	0	0	1	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0054	2576	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0055	2574	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0056	2564	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0057	2576	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0058	2582	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0059	2663	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0060	2594	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0061	2588	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0062	2585	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0063	2582	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0064	2567	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0065	2558	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0066	2579	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0067	2585	1	0	1	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0068	2552	1	0	1	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0069	2588	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0070	2558	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0071	2573	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0072	2576	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125