JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FMR1_chrX_147906919_147956125	0/0	t0073	2576	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0074	2579	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0075	2603	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0076	2594	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0077	2591	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0078	2573	1	0	0	0	0	1	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0079	2558	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	t0080	2570	1	1	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FN1_chr2_215355865_215441068	1/1	t0001	957	215	67	66	32	14	34	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	t0002	957	17	17	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	t0003	957	7	7	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	t0004	957	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN3KRP_chr17_82711706_82733013	0/0	t0001	893	171	24	37	91	9	10	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0002	893	108	13	16	62	5	12	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/1	t0003	892	78	30	13	15	2	17	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0004	893	38	11	16	4	2	5	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0005	891	14	14	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0006	892	4	4	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0007	893	3	0	0	3	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0008	893	2	0	0	2	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	1/0	t0009	893	2	1	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0010	916	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0011	893	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0012	893	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0013	893	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0014	893	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	t0015	892	1	1	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3K_chr17_82730615_82756196	0/0	t0001	485	118	16	26	66	5	5	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0002	463	109	13	20	53	5	18	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/1	t0003	520	51	11	10	12	2	15	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0004	469	27	19	2	5	1	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0005	491	26	4	7	13	2	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0006	517	9	7	2	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0007	484	5	5	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0008	486	4	1	1	1	0	1	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0009	464	3	0	0	3	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0010	486	3	0	1	2	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0011	521	3	3	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0012	521	3	3	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0013	469	3	0	0	0	1	2	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0014	499	2	2	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0015	499	2	2	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0016	518	2	1	1	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0017	514	2	0	2	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0018	486	2	1	0	0	0	1	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0019	487	2	0	1	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0020	487	2	0	0	2	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0021	486	2	0	1	0	0	1	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0022	517	1	1	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0023	466	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196