JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FN3K_chr17_82730615_82756196	0/0	t0024	492	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0025	487	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0026	485	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0027	492	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0028	492	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0029	527	1	1	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0030	463	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	1/0	t0031	464	1	0	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0032	521	1	1	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0033	486	1	0	1	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0034	471	1	0	0	0	0	1	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0035	514	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0036	522	1	0	0	0	0	1	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0037	522	1	1	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0038	486	1	0	1	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0039	485	1	0	0	0	0	1	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0040	487	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0041	485	1	1	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0042	443	1	1	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	t0043	486	1	0	0	1	0	0	copy fasta	FN3K	chr17	82730615	82756196
FNBP1L_chr1_93443118_93559661	1/1	t0001	2410	281	67	64	108	9	31	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0002	2410	22	10	0	12	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0003	2410	7	0	0	7	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0004	2410	2	2	0	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0005	2410	2	0	0	0	2	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0006	2410	2	0	2	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0007	2410	2	0	0	0	1	1	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0008	2410	1	0	0	0	0	1	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0009	2410	1	0	0	1	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0010	2410	1	1	0	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0011	2410	1	0	0	0	0	1	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0012	2410	1	0	0	1	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	t0013	2410	1	0	0	1	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1_chr9_129882187_130048189	0/1	t0001	3570	119	24	31	38	9	16	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0002	3571	9	1	4	1	0	3	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0003	3565	7	0	1	0	1	5	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0004	3566	6	0	3	0	1	2	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0005	3566	6	5	1	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0006	3571	6	1	0	5	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0007	3565	5	5	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0008	3565	5	5	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0009	3567	3	3	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0010	3563	3	2	1	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0011	3570	3	0	0	3	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0012	3566	2	0	2	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0013	3566	2	2	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	1/0	t0014	3567	2	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0015	3571	2	2	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0016	3570	2	0	0	2	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0017	3570	2	0	0	2	0	0	copy fasta	FNBP1	chr9	129882187	130048189