JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FNBP1_chr9_129882187_130048189	0/0	t0018	3571	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0019	3565	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0020	3567	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0021	3567	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0022	3568	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0023	3566	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0024	3567	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0025	3565	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0026	3567	1	0	0	0	0	1	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0027	3568	1	0	0	1	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0028	3570	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0029	3570	1	0	0	0	1	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0030	3569	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0031	3570	1	0	0	0	0	1	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0032	3570	1	0	0	1	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0033	3570	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0034	3570	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0035	3570	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0036	3569	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0037	3571	1	0	0	1	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0038	3572	1	0	1	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0039	3572	1	0	0	0	0	1	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0040	3570	1	0	0	1	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0041	3570	1	0	0	0	0	1	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0042	3570	1	0	0	0	0	1	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0043	3571	1	0	0	1	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0044	3567	1	0	0	0	0	1	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	t0045	3564	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP4_chr11_47711494_47772341	1/1	t0001	982	349	84	63	142	14	44	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	t0002	982	1	0	1	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNDC10_chr1_1593012_1605135	1/1	t0001	1444	192	34	51	71	9	25	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0002	1444	95	19	20	43	5	8	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0003	1444	29	25	3	0	0	1	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0004	1444	18	0	0	17	0	1	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0005	1444	16	0	0	16	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0006	1444	8	2	0	4	0	2	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0007	1442	6	0	2	1	0	3	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0008	1444	6	6	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0009	1444	5	5	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0010	1444	5	0	0	5	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0011	1444	5	0	0	5	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0012	1444	4	0	0	4	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0013	1444	4	0	0	4	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0014	1444	3	2	1	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0015	1444	2	2	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0016	1444	1	1	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0017	1444	1	0	1	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0018	1444	1	0	0	1	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0019	1444	1	0	0	0	0	1	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0020	1444	1	0	0	1	0	0	copy fasta	FNDC10	chr1	1593012	1605135