JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FNDC10_chr1_1593012_1605135	0/0	t0021	1444	1	1	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0022	1444	1	0	0	0	0	1	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	t0023	1444	1	1	0	0	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC11_chr20_63549159_63561695	1/1	t0001	134	416	96	84	170	18	46	copy fasta	FNDC11	chr20	63549159	63561695
FNDC1_chr6_159164400_159277108	0/1	t0001	864	165	42	31	64	8	19	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	t0002	864	102	31	16	41	2	12	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	1/0	t0003	864	29	11	6	2	2	7	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	t0004	864	7	7	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	t0005	864	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	t0006	864	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	t0007	864	1	0	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC3A_chr13_48970912_49214779	1/1	t0001	2690	273	72	44	113	10	32	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0002	2690	10	0	1	9	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0003	2690	2	2	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0004	2690	1	1	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0005	2690	1	0	0	1	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0006	2690	1	1	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0007	2690	1	0	0	1	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0008	2690	1	0	0	1	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0009	2678	1	0	0	1	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	t0010	2690	1	0	1	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3B_chr3_172034578_172406669	0/1	t0001	4416	33	8	8	11	4	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0002	4416	24	7	5	5	3	4	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0003	4417	23	1	3	16	0	3	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0004	4417	6	6	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0005	4415	6	3	2	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0006	4416	5	1	0	4	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0007	4416	4	1	1	0	1	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0008	4417	3	3	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0009	4416	3	3	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0010	4417	3	0	0	3	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0011	4417	3	0	0	0	2	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0012	4414	3	0	1	0	0	2	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0013	4416	3	3	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0014	4416	3	2	1	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0015	4417	3	3	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0016	4416	3	0	1	0	1	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0017	4417	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0018	4417	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0019	4418	2	1	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0020	4417	2	0	0	2	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0021	4416	2	0	0	0	0	2	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0022	4417	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0023	4417	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0024	4415	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0025	4416	2	0	0	1	1	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0026	4416	2	0	0	1	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0027	4416	2	0	2	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0028	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0029	4416	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669