JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FNDC3B_chr3_172034578_172406669	0/0	t0030	4415	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0031	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0032	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0033	4416	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0034	4446	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0035	4446	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0036	4416	1	0	1	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0037	4418	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0038	4416	1	0	0	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0039	4418	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0040	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0041	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0042	4418	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0043	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0044	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0045	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0046	4417	1	0	0	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0047	4417	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0048	4415	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0049	4417	1	0	1	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0050	4417	1	0	0	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0051	4417	1	0	1	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0052	4419	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0053	4418	1	0	1	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0054	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0055	4416	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0056	4416	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0057	4414	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0058	4415	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0059	4416	1	0	0	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0060	4416	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0061	4416	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0062	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0063	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0064	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0065	4417	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0066	4417	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0067	4415	1	0	0	0	1	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0068	4414	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0069	4416	1	0	0	0	1	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0070	4416	1	0	0	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	1/0	t0071	4417	1	0	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0072	4419	1	0	0	1	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	t0073	4414	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC4_chr2_27486883_27500200	1/0	t0001	908	185	36	35	80	12	21	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/1	t0002	908	91	23	24	28	4	11	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0003	908	11	7	4	0	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0004	908	7	7	0	0	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0005	908	4	4	0	0	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0006	908	3	3	0	0	0	0	copy fasta	FNDC4	chr2	27486883	27500200