JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FNDC4_chr2_27486883_27500200	0/0	t0007	908	3	2	1	0	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0008	908	2	2	0	0	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0009	908	2	0	0	1	0	1	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0010	908	2	0	1	1	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0011	908	1	0	1	0	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	t0012	908	1	0	0	0	0	1	copy fasta	FNDC4	chr2	27486883	27500200
FNDC5_chr1_32857268_32875912	0/0	t0001	2193	225	43	37	111	7	27	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	1/1	t0002	2193	121	27	19	54	6	13	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0003	2193	14	0	0	14	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0004	2195	13	0	9	0	1	3	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0005	2199	8	7	1	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0006	2193	6	0	1	0	2	3	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0007	2193	4	4	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0008	2193	3	3	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0009	2193	3	3	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0010	2193	2	0	2	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0011	2193	2	2	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0012	2193	2	2	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0013	2193	1	1	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0014	2193	1	1	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0015	2193	1	1	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0016	2193	1	0	1	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0017	2193	1	1	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0018	2193	1	1	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0019	2193	1	0	0	1	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0020	2193	1	0	1	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0021	2193	1	0	1	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0022	2193	1	1	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC5_chr1_32857268_32875912	0/0	t0023	2193	1	1	0	0	0	0	copy fasta	FNDC5	chr1	32857268	32875912
FNDC7_chr1_108707908_108747749	1/1	t0001	889	342	90	67	123	16	44	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	t0002	889	25	0	1	24	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	t0003	888	4	3	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	t0004	889	2	1	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	t0005	879	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	t0006	889	1	0	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC8_chr17_35116615_35135732	1/1	t0001	378	375	96	73	147	12	45	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	t0002	378	38	1	0	36	0	1	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	t0003	378	1	0	0	1	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	t0004	378	1	1	0	0	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	t0005	378	1	0	1	0	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC9_chr5_157336598_157350677	0/1	t0001	1411	154	6	46	76	6	19	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0002	1411	77	21	6	45	0	5	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0003	1411	62	41	14	3	2	2	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0004	1411	38	9	6	12	6	5	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0005	1411	13	13	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0006	1411	9	0	1	0	2	6	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0007	1411	8	0	0	0	1	7	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0008	1411	5	5	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0009	1411	2	0	0	2	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	1/0	t0010	1409	2	0	1	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677