JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FNDC9_chr5_157336598_157350677	0/0	t0011	1411	1	0	0	1	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0012	1411	1	1	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0013	1411	1	1	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0014	1411	1	0	0	1	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0015	1411	1	0	0	0	1	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0016	1411	1	1	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0017	1411	1	0	1	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	t0018	1411	1	0	1	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNIP1_chr5_131636714_131802017	0/1	t0001	3067	128	27	28	59	2	11	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	1/0	t0002	3068	74	5	17	39	2	10	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0003	3067	29	21	8	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0004	3068	24	0	2	21	0	1	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0005	3069	21	5	5	10	0	1	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0006	3068	12	11	1	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0007	3068	9	2	0	7	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0008	3067	7	7	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0009	3066	5	4	1	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0010	3066	5	0	0	5	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0011	3069	2	0	1	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0012	3067	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0013	3068	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0014	3066	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0015	3067	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0016	3069	1	0	1	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0017	3068	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0018	3068	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0019	3066	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0020	3067	1	1	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0021	3069	1	0	0	0	0	1	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0022	3067	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	t0023	3067	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP2_chr4_158764026_158913050	0/1	t0001	3693	114	29	24	40	4	16	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0002	3693	48	7	17	9	5	10	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0003	3693	35	6	3	20	1	5	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0004	3693	17	13	0	3	0	1	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0005	3692	9	8	1	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	1/0	t0006	3694	5	4	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0007	3697	4	4	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0008	3694	4	2	1	1	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0009	3694	3	1	0	2	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0010	3693	2	2	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0011	3693	2	2	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0012	3693	2	2	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0013	3693	2	2	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0014	3693	1	0	0	1	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0015	3693	1	0	0	1	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0016	3694	1	0	0	1	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0017	3694	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0018	3693	1	0	1	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	t0019	3693	1	0	1	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050