JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FNIP2_chr4_158764026_158913050	0/0	t0020	3694	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNTA_chr8_43051323_43090785	1/1	t0001	528	292	86	54	100	16	34	copy fasta	FNTA	chr8	43051323	43090785
FNTA_chr8_43051323_43090785	0/0	t0002	528	1	1	0	0	0	0	copy fasta	FNTA	chr8	43051323	43090785
FNTA_chr8_43051323_43090785	0/0	t0003	528	1	1	0	0	0	0	copy fasta	FNTA	chr8	43051323	43090785
FNTB_chr14_64981895_65067650	1/1	t0001	1398	242	31	52	120	8	29	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	t0002	1398	113	57	13	33	1	9	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	t0003	1398	2	0	0	0	0	2	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	t0004	1398	1	0	0	1	0	0	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	t0005	1398	1	0	0	0	1	0	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	t0006	1398	1	0	1	0	0	0	copy fasta	FNTB	chr14	64981895	65067650
FOCAD_chr9_20679259_21000950	1/1	t0001	389	307	88	48	127	12	30	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	t0002	389	8	0	0	7	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	t0003	389	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	t0004	389	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	t0005	389	1	0	0	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	t0006	389	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	t0007	389	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOLH1_chr11_49140092_49213602	1/0	t0001	1858	139	45	18	54	8	13	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0002	1858	138	15	29	75	5	14	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/1	t0003	1858	66	19	11	33	0	2	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0004	1858	6	6	0	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0005	1858	5	0	3	0	2	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0006	1858	4	4	0	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0007	1858	3	3	0	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0008	1858	3	1	0	0	0	2	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0009	1858	2	1	1	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0010	1858	2	2	0	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0011	1858	1	0	0	1	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0012	1858	1	0	0	0	0	1	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0013	1858	1	0	0	1	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0014	1858	1	0	0	1	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0015	1858	1	0	0	0	1	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	t0016	1858	1	0	0	1	0	0	copy fasta	FOLH1	chr11	49140092	49213602
FOLR1_chr11_72187140_72201299	1/1	t0001	157	409	94	72	180	16	45	copy fasta	FOLR1	chr11	72187140	72201299
FOLR1_chr11_72187140_72201299	0/0	t0002	157	2	2	0	0	0	0	copy fasta	FOLR1	chr11	72187140	72201299
FOLR1_chr11_72187140_72201299	0/0	t0003	157	1	0	0	0	0	1	copy fasta	FOLR1	chr11	72187140	72201299
FOLR2_chr11_72211794_72226950	1/1	t0001	345	383	93	66	160	14	48	copy fasta	FOLR2	chr11	72211794	72226950
FOLR2_chr11_72211794_72226950	0/0	t0002	345	1	1	0	0	0	0	copy fasta	FOLR2	chr11	72211794	72226950
FOLR3_chr11_72130725_72144892	1/1	t0001	112	380	96	64	158	16	44	copy fasta	FOLR3	chr11	72130725	72144892
FOLR3_chr11_72130725_72144892	0/0	t0002	112	4	0	0	4	0	0	copy fasta	FOLR3	chr11	72130725	72144892
FOSB_chr19_45462996_45480179	1/1	t0001	2759	129	7	35	63	5	17	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0002	2759	60	3	19	31	2	5	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0003	2759	57	15	8	14	4	16	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0004	2759	53	10	8	31	1	3	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0005	2759	35	17	4	6	2	6	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0006	2759	30	1	0	29	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0007	2758	12	11	1	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0008	2759	11	0	0	11	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0009	2759	10	9	1	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0010	2759	6	6	0	0	0	0	copy fasta	FOSB	chr19	45462996	45480179