JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOSB_chr19_45462996_45480179	0/0	t0011	2758	3	1	2	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0012	2758	3	0	1	2	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0013	2758	3	0	0	2	0	1	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0014	2759	3	0	3	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0015	2759	3	3	0	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0016	2759	2	1	0	1	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0017	2759	2	0	0	2	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0018	2758	1	0	0	1	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0019	2759	1	0	1	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0020	2759	1	0	0	1	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0021	2758	1	1	0	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0022	2758	1	1	0	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0023	2758	1	0	0	1	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0024	2758	1	0	0	1	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0025	2759	1	1	0	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0026	2759	1	0	0	1	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0027	2759	1	0	1	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0028	2759	1	1	0	0	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSB_chr19_45462996_45480179	0/0	t0029	2759	1	0	0	1	0	0	copy fasta	FOSB	chr19	45462996	45480179
FOSL1_chr11_65887049_65905388	1/1	t0001	887	409	74	67	208	14	44	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	t0002	887	21	19	2	0	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	t0003	887	4	4	0	0	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	t0004	887	2	1	1	0	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	t0005	887	1	0	0	1	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL1_chr11_65887049_65905388	0/0	t0006	887	1	0	0	1	0	0	copy fasta	FOSL1	chr11	65887049	65905388
FOSL2_chr2_28387858_28422317	0/0	t0001	5731	115	8	37	55	3	12	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0002	5732	64	8	16	18	6	16	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0003	5732	22	0	0	18	1	3	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0004	5732	14	1	0	13	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0005	5731	11	11	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0006	5731	10	1	0	7	0	2	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0007	5730	7	0	2	3	0	2	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0008	5734	6	4	2	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0009	5731	5	3	0	2	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0010	5732	5	5	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0011	5732	5	0	0	5	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0012	5727	5	4	1	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0013	5725	5	1	0	2	0	2	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0014	5730	4	0	2	2	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0015	5725	4	0	1	0	0	3	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0016	5734	3	3	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0017	5731	3	0	1	1	0	1	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0018	5732	3	0	0	3	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0019	5731	3	1	0	1	0	1	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0020	5734	2	2	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0021	5734	2	2	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0022	5733	2	0	0	2	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0023	5732	2	0	0	2	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0024	5732	2	2	0	0	0	0	copy fasta	FOSL2	chr2	28387858	28422317
FOSL2_chr2_28387858_28422317	0/0	t0025	5731	2	1	0	1	0	0	copy fasta	FOSL2	chr2	28387858	28422317