Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKR1C1_chr10_4958415_4988283	0/0	t0139	5572	1	0	0	0	0	1	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0140	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0141	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0142	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0143	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0144	5572	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0145	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0146	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0147	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0148	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0149	5572	1	0	1	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0150	5572	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0151	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0152	5572	1	0	0	0	1	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0153	5572	1	0	0	0	0	1	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0154	5572	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0155	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0156	5572	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0157	5572	1	0	1	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0158	5572	1	0	0	0	0	1	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0159	5572	1	0	0	0	1	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0160	5572	1	0	1	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0161	5572	1	0	0	0	0	1	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0162	5572	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0163	5572	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0164	5572	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0165	5572	1	0	1	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0166	5571	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0167	5571	1	0	1	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C2_chr10_4982775_5008857	0/0	t0001	2244	136	2	23	94	2	15	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0002	2245	74	4	6	56	4	4	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/1	t0003	2243	27	12	7	0	1	6	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0004	2244	25	3	9	4	2	7	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0005	2244	22	0	5	5	4	8	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0006	2245	15	14	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0007	2243	15	6	6	0	2	1	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0008	2244	13	12	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0009	2243	10	2	5	0	1	2	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0010	2245	8	8	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0011	2244	4	0	0	4	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0012	2244	4	4	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0013	2245	4	0	0	4	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0014	2243	4	4	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0015	2244	3	3	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0016	2244	3	3	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0017	2244	3	0	0	3	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	1/0	t0018	2244	3	2	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0019	2245	2	0	2	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0020	2244	2	2	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0021	2244	2	0	2	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857