JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXB1_chr15_59999311_60012444	0/0	t0007	1894	12	11	0	0	0	1	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0008	1898	9	0	8	1	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0009	1897	8	3	0	3	1	1	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0010	1891	7	7	0	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0011	1896	5	0	2	1	0	2	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0012	1894	5	0	3	1	1	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0013	1893	5	2	3	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0014	1898	5	0	0	5	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0015	1893	5	4	1	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0016	1897	5	2	2	1	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0017	1898	4	4	0	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0018	1887	4	0	0	4	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0019	1895	4	1	1	2	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0020	1887	4	4	0	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0021	1888	3	0	0	3	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0022	1899	3	0	0	3	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0023	1897	3	0	0	3	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0024	1895	3	1	0	0	0	2	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0025	1899	3	1	0	2	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0026	1894	2	0	0	2	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0027	1893	2	0	0	1	0	1	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0028	1898	2	0	1	0	1	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0029	1895	1	0	0	0	0	1	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0030	1895	1	0	0	0	0	1	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0031	1894	1	0	0	0	1	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0032	1894	1	0	1	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0033	1896	1	0	1	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0034	1892	1	1	0	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0035	1886	1	0	0	1	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0036	1887	1	0	0	1	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0037	1894	1	0	0	0	0	1	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0038	1887	1	0	0	0	0	1	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0039	1888	1	0	0	1	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0040	1898	1	0	0	0	0	1	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0041	1893	1	1	0	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0042	1896	1	1	0	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	t0043	1898	1	1	0	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/1	t0044	1897	1	0	0	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXC1_chr6_1604915_1618897	0/0	t0001	2323	198	24	38	108	6	22	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0002	2322	58	21	5	28	2	2	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0003	2323	50	4	15	25	4	2	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0004	2323	25	5	4	6	1	9	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0005	2324	16	5	3	4	0	4	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	1/1	t0006	2322	11	0	4	4	1	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0007	2323	9	8	1	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0008	2324	7	0	1	5	0	1	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0009	2323	5	4	1	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0010	2322	5	1	0	2	1	1	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0011	2322	5	5	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0012	2322	4	0	0	4	0	0	copy fasta	FOXC1	chr6	1604915	1618897