JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXC1_chr6_1604915_1618897	0/0	t0013	2323	4	0	0	0	0	4	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0014	2325	3	1	2	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0015	2324	3	3	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0016	2323	3	3	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0017	2322	3	3	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0018	2323	2	0	1	0	1	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0019	2323	2	0	2	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0020	2322	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0021	2322	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0022	2323	1	0	1	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0023	2323	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0024	2350	1	0	0	1	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0025	2323	1	0	0	1	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0026	2251	1	0	0	1	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0027	2323	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0028	2322	1	0	0	0	0	1	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0029	2322	1	0	1	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0030	2323	1	0	1	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0031	2322	1	0	0	1	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0032	2322	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0033	2322	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	t0034	2322	1	1	0	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC2_chr16_86561829_86574728	0/1	t0001	1394	283	58	59	120	11	34	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0002	1394	51	1	9	35	0	6	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	1/0	t0003	1395	42	1	9	25	2	4	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0004	1393	24	13	2	7	1	1	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0005	1394	18	0	0	17	0	1	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0006	1395	16	11	2	1	0	2	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0007	1395	5	0	0	5	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0008	1393	3	0	2	0	0	1	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0009	1394	3	0	0	3	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0010	1395	3	3	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0011	1394	2	1	1	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0012	1393	2	2	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0013	1393	2	2	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0014	1394	1	1	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0015	1394	1	1	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0016	1394	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0017	1394	1	0	0	0	0	1	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0018	1394	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	t0019	1394	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXD1_chr5_73441266_73453777	1/1	t0001	1115	333	53	60	159	14	45	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	t0002	1115	41	35	6	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	t0003	1115	31	3	0	26	0	2	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	t0004	1115	3	0	2	0	0	1	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	t0005	1115	2	2	0	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	t0006	1115	1	1	0	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	t0007	1115	1	0	0	1	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	t0008	1115	1	1	0	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	t0009	1115	1	1	0	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777