JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXD2_chr1_47433044_47445691	0/0	t0001	1160	117	9	31	50	8	19	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0002	1159	108	25	15	61	1	6	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/1	t0003	1159	65	28	8	18	1	9	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0004	1158	47	15	12	9	2	9	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0005	1160	23	0	1	22	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0006	1161	12	0	2	6	1	3	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0007	1160	6	0	0	6	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0008	1157	6	4	1	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0009	1158	5	0	0	5	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0010	1158	4	3	0	0	1	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0011	1160	4	0	4	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0012	1159	3	0	0	3	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0013	1159	2	2	0	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	1/0	t0014	1161	2	1	0	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0015	1158	2	0	0	2	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0016	1161	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0017	1161	1	0	1	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0018	1162	1	1	0	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0019	1159	1	0	1	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0020	1161	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0021	1147	1	0	0	0	0	1	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0022	1149	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0023	1157	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0024	1159	1	0	0	0	0	1	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	t0025	1159	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD3_chr1_63317567_63330128	1/1	t0001	1126	313	63	53	156	17	22	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0002	1126	50	20	10	13	0	7	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0003	1126	49	11	1	28	0	9	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0004	1126	20	0	4	15	0	1	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0005	1126	12	0	7	3	1	1	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0006	1126	7	0	7	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0007	1126	2	0	0	0	0	2	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0008	1126	2	1	1	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0009	1126	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0010	1126	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0011	1126	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0012	1126	1	1	0	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	t0013	1126	1	0	1	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD4L1_chr2_113493665_113506150	1/0	t0001	1260	96	7	28	38	3	19	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0002	1259	96	11	21	50	3	11	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0003	1260	44	33	3	0	3	5	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0004	1260	22	10	0	12	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0005	1260	21	21	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0006	1259	12	1	8	0	2	1	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0007	1260	11	0	1	7	1	2	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/1	t0008	1260	6	0	0	0	2	3	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0009	1260	3	0	0	0	0	3	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0010	1260	3	0	0	3	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0011	1255	3	2	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0012	1259	2	2	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150