JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXD4L1_chr2_113493665_113506150	0/0	t0013	1259	1	0	0	1	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0014	1259	1	0	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0015	1259	1	0	0	1	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0016	1259	1	0	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0017	1260	1	1	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0018	1260	1	0	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	t0019	1260	1	0	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L3_chr9_68297867_68310084	1/0	t0001	965	143	34	25	58	6	19	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	t0002	965	28	6	5	14	0	3	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	t0003	965	1	1	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	t0004	965	1	1	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	t0005	965	1	0	0	1	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	t0006	965	1	0	0	1	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L5_chr9_65277101_65290209	0/0	t0001	1859	39	20	2	10	1	6	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	1/0	t0002	1859	9	7	1	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0003	1859	5	1	1	1	1	1	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0004	1859	4	2	0	1	1	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0005	1859	4	0	0	4	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0006	1854	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0007	1859	3	2	0	0	1	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0008	1859	3	0	0	3	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0009	1859	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0010	1859	1	0	1	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0011	1859	1	1	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0012	1859	1	1	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0013	1859	1	0	0	1	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0014	1859	1	1	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0015	1859	1	0	1	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0016	1859	1	0	0	0	0	1	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	t0017	1859	1	1	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L6_chr9_41121435_41133681	0/1	t0001	994	270	54	52	125	9	29	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0002	994	20	0	1	17	0	2	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0003	994	14	13	1	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0004	994	4	4	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0005	994	4	4	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0006	994	3	0	1	0	1	1	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0007	994	2	0	0	0	0	2	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0008	994	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0009	994	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0010	994	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0011	994	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0012	994	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0013	994	1	0	1	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0014	994	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	t0015	994	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4_chr9_111231_123417	0/1	t0001	869	184	15	32	106	9	21	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0002	869	99	3	12	74	1	9	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0003	868	87	28	27	24	1	7	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0004	869	17	16	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	1/0	t0005	868	17	9	1	2	1	3	copy fasta	FOXD4	chr9	111231	123417