JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXD4_chr9_111231_123417	0/0	t0006	869	10	6	1	0	0	3	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0007	869	9	0	3	4	0	2	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0008	869	5	0	3	1	0	1	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0009	868	4	3	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0010	869	4	4	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0011	869	3	0	0	0	0	3	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0012	868	3	3	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0013	868	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0014	869	2	0	0	2	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0015	869	1	0	0	0	0	1	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0016	869	1	0	0	1	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0017	869	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0018	869	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0019	869	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	t0020	869	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXE1_chr9_97848226_97861717	0/0	t0001	2371	205	44	43	85	9	24	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0002	2371	31	6	14	2	0	9	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	1/1	t0003	2371	26	1	12	2	3	6	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0004	2371	15	14	1	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0005	2371	14	0	1	9	1	3	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0006	2371	12	0	0	12	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0007	2371	6	5	1	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0008	2371	6	0	1	0	3	2	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0009	2371	3	0	0	3	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0010	2389	3	0	0	3	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0011	2371	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0012	2371	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0013	2371	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0014	2371	1	0	0	1	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0015	2371	1	0	0	1	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0016	2371	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	t0017	2371	1	0	1	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE3_chr1_47411285_47423052	0/1	t0001	809	250	62	48	92	11	36	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	t0002	809	104	14	15	69	2	4	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	t0003	809	50	2	11	30	1	6	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	t0004	809	9	7	2	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	t0005	809	8	8	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	t0006	809	4	4	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	t0007	809	2	2	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	1/0	t0008	809	2	1	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	t0009	809	1	0	0	1	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXF1_chr16_86505527_86520422	0/1	t0001	2381	127	6	28	78	6	8	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	1/0	t0002	2381	42	4	10	21	3	3	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0003	2380	26	2	6	5	1	12	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0004	2381	21	0	0	21	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0005	2382	19	0	1	17	0	1	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0006	2382	14	1	3	6	0	4	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0007	2382	9	0	2	7	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0008	2382	9	2	2	0	0	5	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0009	2380	8	0	0	8	0	0	copy fasta	FOXF1	chr16	86505527	86520422