JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXF1_chr16_86505527_86520422	0/0	t0060	2382	1	1	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0061	2382	1	1	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0062	2382	1	0	0	0	0	1	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0063	2382	1	0	0	0	0	1	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0064	2382	1	0	0	0	0	1	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0065	2383	1	0	1	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0066	2381	1	1	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0067	2380	1	0	1	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0068	2353	1	0	1	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0069	2381	1	0	0	0	1	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0070	2381	1	0	0	1	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0071	2382	1	1	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0072	2382	1	1	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0073	2380	1	0	0	0	0	1	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0074	2381	1	1	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0075	2381	1	0	0	1	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0076	2381	1	0	1	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	t0077	2380	1	0	0	1	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF2_chr6_1384576_1400603	0/1	t0001	1116	379	67	63	202	9	37	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	1/0	t0002	1117	44	12	19	0	7	5	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0003	1118	4	4	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0004	1116	4	0	0	4	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0005	1119	4	4	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0006	1116	3	1	0	0	0	2	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0007	1118	3	0	0	3	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0008	1117	2	2	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0009	1117	2	2	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0010	1116	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0011	1116	1	1	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0012	1119	1	1	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0013	1121	1	1	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	t0014	1116	1	1	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXG1_chr14_28761787_28775277	0/0	t0001	2023	191	60	33	79	4	15	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	1/1	t0002	2022	96	8	17	58	3	8	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0003	2018	66	9	23	17	4	13	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0004	2022	25	3	3	15	2	2	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0005	2024	10	2	0	8	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0006	2022	8	7	1	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0007	2024	4	0	1	3	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0008	2019	3	0	0	0	0	3	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0009	2023	2	0	0	2	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0010	2022	2	0	0	2	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0011	2019	2	0	1	1	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0012	2021	2	0	1	1	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0013	2018	1	0	0	0	1	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0014	2023	1	0	0	1	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0015	2023	1	0	0	0	0	1	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0016	2022	1	0	0	1	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0017	2022	1	1	0	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0018	2018	1	0	0	0	0	1	copy fasta	FOXG1	chr14	28761787	28775277