JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXG1_chr14_28761787_28775277	0/0	t0019	2023	1	0	1	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0020	2025	1	0	0	1	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0021	2022	1	0	0	1	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0022	2022	1	0	0	0	0	1	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	t0023	2023	1	0	1	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXH1_chr8_144468412_144480849	0/1	t0001	920	324	91	64	120	10	38	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	1/0	t0002	920	45	0	4	40	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0003	920	4	0	0	4	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0004	920	3	0	0	3	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0005	920	2	2	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0006	920	2	0	0	2	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0007	920	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0008	920	1	0	0	1	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0009	920	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0010	920	1	0	1	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0011	920	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	t0012	920	1	0	1	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXI1_chr5_170100897_170114734	0/1	t0001	1185	174	16	44	82	12	19	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0002	1186	163	49	16	83	1	14	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0003	1185	21	0	8	10	2	1	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	1/0	t0004	1185	16	14	1	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0005	1185	15	1	6	5	0	3	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0006	1185	9	0	0	7	0	2	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0007	1185	8	5	1	0	1	1	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0008	1185	2	2	0	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0009	1185	2	2	0	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0010	1186	1	0	0	1	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	t0011	1185	1	1	0	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI2_chr10_127732185_127746183	0/1	t0001	2322	71	12	23	24	4	7	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0002	2316	39	1	4	31	0	3	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0003	2316	20	3	9	5	2	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0004	2323	15	2	3	7	2	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0005	2304	12	1	1	9	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0006	2366	10	0	0	6	0	4	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0007	2252	9	1	6	0	0	2	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0008	2364	9	0	0	9	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0009	2316	9	1	3	4	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0010	2310	8	7	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0011	2354	8	0	0	8	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0012	2258	5	3	0	0	2	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0013	2316	5	4	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0014	2258	5	5	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0015	2311	5	0	0	5	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0016	2317	5	0	0	5	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0017	2292	5	0	0	5	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0018	2310	5	0	0	5	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0019	2298	4	0	0	4	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0020	2321	4	0	0	2	0	2	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0021	2322	4	0	4	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0022	2310	4	0	0	4	0	0	copy fasta	FOXI2	chr10	127732185	127746183