JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXI2_chr10_127732185_127746183	0/0	t0023	2310	3	0	0	3	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0024	2316	3	1	0	1	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0025	2322	3	3	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0026	2348	3	0	0	3	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0027	2328	3	0	0	3	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0028	2316	3	1	2	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0029	2313	3	0	0	3	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0030	2311	3	0	0	3	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0031	2322	3	0	3	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0032	2329	3	2	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0033	2314	2	2	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0034	2326	2	2	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0035	2259	2	2	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0036	2316	2	0	0	0	0	2	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0037	2292	2	0	2	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0038	2296	2	2	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0039	2298	2	2	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0040	2316	2	1	0	0	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0041	2313	2	0	2	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0042	2310	2	0	0	2	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0043	2317	2	2	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0044	2358	2	0	0	2	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0045	2365	2	0	0	2	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0046	2360	2	0	0	2	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0047	2320	2	1	0	0	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0048	2321	2	0	0	2	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0049	2294	2	0	0	0	0	2	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0050	2322	2	0	0	0	1	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0051	2304	2	0	0	2	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0052	2316	2	0	0	2	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0053	2316	2	1	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0054	2277	2	2	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0055	2304	2	0	2	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0056	2228	1	0	0	0	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0057	2246	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0058	2248	1	0	0	0	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0059	2320	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	1/0	t0060	2308	1	0	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0061	2325	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0062	2337	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0063	2343	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0064	2310	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0065	2304	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0066	2318	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0067	2258	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0068	2259	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0069	2316	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0070	2304	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0071	2296	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0072	2316	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183