Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKR1C2_chr10_4982775_5008857	0/0	t0022	2244	2	1	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0023	2243	2	2	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0024	2244	2	0	0	2	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0025	2245	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0026	2245	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0027	2243	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0028	2244	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0029	2244	1	0	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0030	2244	1	0	0	0	0	1	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0031	2244	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0032	2244	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0033	2244	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0034	2245	1	0	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0035	2244	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0036	2244	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0037	2244	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0038	2245	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0039	2244	1	0	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0040	2243	1	0	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0041	2243	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0042	2243	1	0	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0043	2245	1	0	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0044	2243	1	0	0	0	0	1	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0045	2244	1	0	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0046	2245	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0047	2245	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0048	2243	1	0	0	0	0	1	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0049	2245	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0050	2244	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	t0051	2244	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C3_chr10_5089414_5112686	1/0	t0001	215	271	34	39	167	8	22	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/1	t0002	215	163	58	39	39	8	18	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	t0003	215	4	4	0	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C4_chr10_5191837_5223949	0/1	t0001	221	374	80	62	180	16	35	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	t0002	219	39	0	10	24	2	3	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	t0003	219	10	0	8	0	0	2	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	1/0	t0004	221	10	9	0	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	t0005	221	1	1	0	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C8_chr10_5148920_5190150	1/1	t0001	267	359	94	68	145	16	34	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	t0002	267	43	0	12	24	2	5	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	t0003	267	2	2	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	t0004	267	2	2	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	t0005	267	1	0	0	1	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	t0006	267	1	0	0	0	0	1	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1D1_chr7_138071459_138123305	0/0	t0001	1704	137	11	27	72	6	21	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	1/0	t0002	1704	46	5	17	20	2	1	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0003	1704	37	4	5	21	4	3	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/1	t0004	1704	36	1	3	26	0	5	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0005	1704	18	0	5	11	0	2	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0006	1704	13	12	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305