JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXI2_chr10_127732185_127746183	0/0	t0123	2298	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0124	2316	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0125	2310	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0126	2308	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0127	2316	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0128	2305	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0129	2325	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0130	2322	1	0	0	0	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0131	2348	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0132	2311	1	0	0	0	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0133	2317	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0134	2295	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0135	2310	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0136	2299	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0137	2316	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0138	2317	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0139	2298	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0140	2289	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0141	2310	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0142	2308	1	0	0	0	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0143	2307	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0144	2316	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0145	2322	1	0	0	0	0	1	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0146	2329	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0147	2331	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0148	2290	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0149	2283	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0150	2333	1	0	1	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0151	2296	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	t0152	2194	1	1	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI3_chr2_88441787_88457693	1/1	t0001	1579	373	92	64	158	13	44	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0002	1580	13	1	5	5	0	2	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0003	1580	8	3	2	0	2	1	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0004	1579	5	0	0	5	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0005	1579	4	0	2	0	1	1	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0006	1579	3	0	0	3	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0007	1579	2	1	1	0	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0008	1579	2	2	0	0	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0009	1579	1	1	0	0	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0010	1579	1	0	0	1	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0011	1579	1	0	0	1	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	t0012	1579	1	0	0	1	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXJ1_chr17_76131333_76146245	1/1	t0001	1322	290	67	56	115	14	36	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0002	1322	45	7	8	26	0	4	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0003	1323	16	8	3	3	0	2	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0004	1322	6	6	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0005	1322	2	0	0	0	0	2	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0006	1322	2	0	2	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0007	1322	2	2	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0008	1322	2	0	1	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245