JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXJ1_chr17_76131333_76146245	0/0	t0009	1323	2	0	0	2	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0010	1323	2	2	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0011	1322	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0012	1322	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0013	1322	1	0	0	0	0	1	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0014	1322	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0015	1322	1	0	0	0	0	1	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0016	1322	1	1	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0017	1322	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0018	1322	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0019	1322	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0020	1322	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	t0021	1323	1	1	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ2_chr12_8027716_8060517	0/1	t0001	3800	65	21	16	17	4	6	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0002	3800	61	2	8	43	2	6	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	1/0	t0003	3800	53	13	7	27	2	3	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0004	3800	35	2	0	23	0	10	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0005	3800	34	3	21	3	2	5	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0006	3800	14	4	6	2	0	2	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0007	3800	12	11	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0008	3800	10	0	6	0	4	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0009	3800	8	2	0	4	0	2	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0010	3800	8	1	0	6	0	1	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0011	3800	6	1	1	0	0	4	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0012	3800	6	0	0	6	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0013	3800	5	5	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0014	3800	5	5	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0015	3800	5	5	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0016	3800	4	3	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0017	3801	3	0	0	3	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0018	3799	3	0	1	1	1	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0019	3800	2	1	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0020	3800	2	2	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0021	3799	2	2	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0022	3800	2	0	1	0	1	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0023	3800	2	2	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0024	3801	2	0	0	2	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0025	3800	2	2	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0026	3800	2	0	2	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0027	3800	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0028	3800	1	0	0	1	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0029	3799	1	0	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0030	3800	1	0	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0031	3800	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0032	3800	1	0	0	0	0	1	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0033	3801	1	0	0	0	0	1	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0034	3800	1	0	0	0	0	1	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0035	3800	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0036	3799	1	0	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0037	3800	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517