JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXJ2_chr12_8027716_8060517	0/0	t0038	3801	1	0	0	1	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0039	3800	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0040	3800	1	0	0	0	0	1	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0041	3801	1	0	0	1	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0042	3800	1	0	0	1	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0043	3800	1	0	0	1	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0044	3800	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0045	3800	1	0	0	0	0	1	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0046	3800	1	0	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	t0047	3800	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ3_chr1_42171548_42340235	0/1	t0001	3357	207	35	40	94	8	29	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	1/0	t0002	3357	69	10	16	33	0	9	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0003	3357	8	8	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0004	3357	7	7	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0005	3357	5	0	0	5	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0006	3357	4	2	0	0	0	2	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0007	3357	4	0	0	4	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0008	3357	3	2	1	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0009	3357	3	3	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0010	3357	3	3	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0011	3357	3	0	0	3	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0012	3356	2	2	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0013	3357	2	2	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0014	3357	1	0	0	1	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0015	3357	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0016	3357	1	0	0	1	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0017	3357	1	0	0	1	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0018	3357	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0019	3357	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0020	3281	1	0	0	1	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0021	3356	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0022	3357	1	0	0	1	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0023	3357	1	0	1	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0024	3357	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	t0025	3357	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXK1_chr7_4677295_4776442	0/0	t0001	8989	58	3	15	29	1	10	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	1/0	t0002	8993	21	0	8	10	2	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0003	8990	12	2	2	5	0	3	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0004	8997	9	9	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0005	8991	9	0	4	3	0	2	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0006	8673	7	5	2	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0007	8986	5	5	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0008	8992	4	0	0	0	0	4	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0009	8995	4	0	0	4	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0010	8670	4	4	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0011	8988	3	0	0	3	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0012	8983	3	0	0	3	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0013	8993	3	0	0	0	2	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0014	8989	3	3	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0015	8990	2	2	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442