JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXK1_chr7_4677295_4776442	0/0	t0016	8670	2	1	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0017	8989	2	2	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0018	8999	2	2	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0019	8998	2	2	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0020	8989	2	0	0	2	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0021	8989	2	0	0	2	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0022	8989	2	1	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0023	8995	2	0	0	1	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0024	8993	2	0	1	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0025	8990	2	0	2	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0026	8986	2	1	0	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0027	8989	2	0	2	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0028	9000	2	0	0	2	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0029	8995	2	0	0	2	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0030	8999	2	0	0	2	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0031	8997	2	0	2	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0032	8993	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0033	8990	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0034	8989	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0035	8989	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0036	8996	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0037	8986	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0038	8987	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0039	8991	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0040	8992	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0041	8670	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0042	8991	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0043	8983	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0044	8989	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0045	8991	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0046	8992	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0047	8990	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0048	8991	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0049	8991	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0050	8989	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0051	8993	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0052	8996	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0053	8995	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0054	8997	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0055	8992	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0056	8993	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0057	8990	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0058	8670	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0059	8991	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0060	8989	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0061	8990	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0062	8990	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0063	8987	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0064	8984	1	0	0	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0065	8992	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442