JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXK1_chr7_4677295_4776442	0/0	t0066	8989	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0067	8990	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0068	8990	1	0	0	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0069	8991	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0070	8985	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0071	8993	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0072	8989	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0073	8989	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/1	t0074	8997	1	0	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0075	8989	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0076	8993	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0077	8989	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0078	8989	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0079	8993	1	0	0	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0080	8991	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0081	8994	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0082	8994	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0083	8994	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0084	8989	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0085	8989	1	0	0	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0086	8993	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0087	8991	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0088	8992	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0089	8989	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0090	8993	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0091	8995	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0092	8997	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0093	8998	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0094	8999	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0095	8990	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0096	8990	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0097	8990	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0098	8993	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0099	8998	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0100	8987	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0101	8985	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0102	8988	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0103	8987	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0104	8984	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0105	8989	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0106	8998	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0107	8975	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0108	8983	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0109	8673	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0110	8993	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0111	8990	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0112	8992	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0113	8993	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0114	8990	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0115	8992	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442