JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXK1_chr7_4677295_4776442	0/0	t0116	8988	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0117	8994	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0118	8994	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0119	8992	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0120	8989	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0121	8998	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0122	8998	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0123	8999	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0124	8999	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0125	8994	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0126	8997	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0127	8996	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0128	8990	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0129	8989	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0130	8989	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0131	8990	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0132	8992	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0133	8998	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0134	8990	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0135	8674	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0136	8676	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0137	8679	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0138	8666	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0139	8985	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0140	8984	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0141	8991	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0142	8996	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0143	8997	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0144	8995	1	0	0	0	0	1	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0145	8997	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	t0146	8999	1	1	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK2_chr17_82514732_82609602	0/0	t0001	3258	52	4	16	16	4	12	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0002	3258	37	3	13	9	4	8	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0003	3261	31	11	2	11	1	6	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0004	3258	28	7	2	15	2	2	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0005	3258	17	4	3	4	0	6	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	1/0	t0006	3261	17	7	3	5	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0007	3258	12	1	4	5	1	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/1	t0008	3258	11	1	6	1	0	2	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0009	3260	8	5	3	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0010	3259	6	2	2	0	0	2	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0011	3261	6	4	2	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0012	3259	5	5	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0013	3259	5	0	2	1	0	2	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0014	3258	4	1	0	3	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0015	3249	4	0	0	4	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0016	3259	4	3	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0017	3261	4	1	2	0	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0018	3259	4	4	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0019	3258	3	0	0	3	0	0	copy fasta	FOXK2	chr17	82514732	82609602