JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXK2_chr17_82514732_82609602	0/0	t0020	3258	3	1	2	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0021	3262	3	1	0	2	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0022	3258	3	0	3	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0023	3262	3	1	0	1	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0024	3261	3	0	0	3	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0025	3259	2	0	1	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0026	3261	2	0	2	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0027	3260	2	2	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0028	3258	2	2	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0029	3258	2	2	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0030	3258	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0031	3258	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0032	3259	1	0	1	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0033	3261	1	0	1	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0034	3258	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0035	3258	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0036	3259	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0037	3258	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0038	3258	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0039	3261	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0040	3258	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0041	3261	1	0	0	0	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0042	3258	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0043	3258	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0044	3261	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0045	3258	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0046	3258	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0047	3261	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0048	3262	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0049	3258	1	0	1	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0050	3259	1	0	1	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0051	3259	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0052	3259	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0053	3261	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	t0054	3258	1	0	0	0	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXL1_chr16_86573549_86588478	0/0	t0001	3893	137	22	30	52	11	22	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0002	3893	59	4	22	28	2	3	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0003	3893	50	9	6	31	0	4	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0004	3893	33	0	5	26	0	2	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0005	3893	30	0	2	25	0	3	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0006	3893	24	6	4	9	1	4	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0007	3893	15	0	0	13	0	2	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0008	3895	9	9	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0009	3893	9	0	0	9	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0010	3893	8	7	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0011	3893	8	5	1	0	1	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0012	3892	5	5	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0013	3893	5	5	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0014	3893	5	0	0	5	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0015	3893	5	0	0	5	0	0	copy fasta	FOXL1	chr16	86573549	86588478