JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXL1_chr16_86573549_86588478	0/0	t0016	3893	4	3	1	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0017	3893	4	0	0	0	0	4	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0018	3893	3	0	3	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0019	3892	2	2	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0020	3893	2	2	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0021	3893	2	2	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0022	3893	2	1	1	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0023	3893	2	0	0	2	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0024	3893	2	0	0	2	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0025	3893	2	0	1	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0026	3893	2	0	0	2	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0027	3893	2	2	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0028	3892	2	0	2	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0029	3892	2	2	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0030	3908	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0031	3881	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0032	3893	1	0	1	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0033	3893	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0034	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0035	3893	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0036	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0037	3893	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0038	3892	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0039	3893	1	0	1	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0040	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0041	3893	1	0	1	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0042	3893	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0043	3893	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0044	3893	1	0	0	0	1	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0045	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0046	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0047	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0048	3893	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0049	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0050	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0051	3893	1	0	1	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0052	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0053	3893	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0054	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0055	3893	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	t0056	3893	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL2NB_chr3_138942217_138958990	1/0	t0001	3567	172	20	40	78	11	22	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/1	t0002	3570	49	17	3	24	0	4	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0003	3567	28	0	0	28	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0004	3567	24	9	0	15	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0005	3564	20	0	13	7	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0006	3566	9	1	3	5	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0007	3572	7	7	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0008	3567	4	4	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0009	3574	4	2	2	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990