JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
FOXL2NB_chr3_138942217_138958990	0/0	t0010	3570	3	2	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0011	3571	3	2	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0012	3563	3	0	0	1	2	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0013	3569	3	3	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0014	3567	3	3	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0015	3567	3	0	1	0	2	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0016	3567	3	3	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0017	3567	3	0	0	3	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0018	3567	2	0	0	1	1	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0019	3570	2	0	0	0	2	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0020	3572	2	2	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0021	3569	2	2	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0022	3568	2	0	0	2	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0023	3567	2	2	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0024	3567	2	0	0	0	2	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0025	3567	2	2	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0026	3568	2	0	1	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0027	3568	2	0	0	2	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0028	3567	2	1	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0029	3571	2	2	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0030	3569	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0031	3571	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0032	3569	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0033	3570	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0034	3570	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0035	3571	1	0	0	0	1	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0036	3572	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0037	3563	1	0	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0038	3562	1	0	0	0	1	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0039	3563	1	0	0	0	1	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0040	3563	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0041	3564	1	0	0	0	1	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0042	3566	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0043	3570	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0044	3570	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0045	3572	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0046	3566	1	0	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0047	3567	1	0	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0048	3568	1	0	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0049	3569	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0050	3567	1	0	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0051	3567	1	0	1	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0052	3567	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0053	3567	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0054	3568	1	0	0	0	1	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0055	3567	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0056	3568	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0057	3567	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0058	3564	1	1	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	t0059	3567	1	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990