JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXL2NB_chr3_138942217_138958990	0/0	t0060	3567	1	0	0	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2_chr3_138939224_138952137	1/0	t0001	1784	218	22	38	122	10	25	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/1	t0002	1786	44	17	1	22	0	3	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0003	1784	23	12	4	2	1	4	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0004	1784	16	15	1	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0005	1785	14	0	0	14	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0006	1786	12	0	12	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0007	1784	10	2	6	0	1	1	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0008	1784	8	1	0	6	0	1	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0009	1785	8	7	1	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0010	1784	6	6	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0011	1784	3	0	2	0	0	1	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0012	1786	3	0	1	0	0	2	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0013	1786	3	0	0	0	0	3	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0014	1784	3	3	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0015	1784	3	3	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0016	1785	2	0	2	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0017	1784	2	2	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0018	1785	2	2	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0019	1785	2	0	0	2	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0020	1785	2	2	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0021	1784	2	0	2	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0022	1785	2	0	2	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0023	1785	1	1	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0024	1784	1	0	0	1	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0025	1784	1	0	0	1	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0026	1784	1	0	0	1	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0027	1786	1	0	1	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0028	1784	1	0	1	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0029	1785	1	0	0	1	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0030	1784	1	0	1	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0031	1785	1	1	0	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/0	t0032	1784	1	0	1	0	0	0	copy fasta	FOXL2	chr3	138939224	138952137
FOXM1_chr12_2852680_2882174	1/1	t0001	1261	395	59	77	199	12	46	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0002	1261	24	22	2	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0003	1261	11	9	2	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0004	1261	2	0	0	2	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0005	1261	1	0	0	1	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0006	1261	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0007	1261	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0008	1261	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0009	1261	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	t0010	1261	1	0	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXN1_chr17_28501348_28543900	1/1	t0001	1575	164	18	28	76	9	31	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0002	1575	104	26	24	45	1	8	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0003	1575	23	5	5	9	2	2	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0004	1575	12	11	1	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0005	1575	7	5	2	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0006	1575	6	3	2	1	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0007	1575	6	5	1	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900