JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXN1_chr17_28501348_28543900	0/0	t0008	1575	5	0	3	0	2	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0009	1575	4	1	2	0	0	1	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0010	1575	3	3	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0011	1575	3	3	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0012	1575	2	2	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0013	1575	2	0	0	2	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0014	1575	2	2	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0015	1575	2	2	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0016	1575	2	1	1	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0017	1575	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0018	1575	1	0	1	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0019	1575	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0020	1575	1	0	0	1	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0021	1575	1	0	0	1	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0022	1575	1	0	0	1	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0023	1575	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0024	1575	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	t0025	1575	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN2_chr2_48309682_48384295	1/1	t0001	4142	170	42	35	56	8	27	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0002	4142	95	8	12	63	2	10	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0003	4141	17	10	4	0	1	2	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0004	4142	17	0	0	17	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0005	4142	14	11	1	0	0	2	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0006	4142	7	0	3	0	3	1	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0007	4142	2	2	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0008	4142	2	2	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0009	4142	2	0	0	2	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0010	4141	2	1	1	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0011	4142	2	0	0	1	0	1	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0012	4142	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0013	4142	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0014	4142	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0015	4142	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0016	4142	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0017	4142	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0018	4142	1	0	0	1	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0019	4142	1	0	0	0	0	1	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0020	4142	1	0	1	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0021	4142	1	0	1	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0022	4141	1	0	1	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0023	4142	1	0	0	1	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0024	4142	1	0	1	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	t0025	4142	1	0	0	1	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN3_chr14_89151177_89422233	1/1	t0001	6615	41	4	7	18	2	8	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0002	6613	10	9	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0003	6617	9	3	1	3	1	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0004	6621	8	0	1	7	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0005	6629	8	0	5	0	1	2	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0006	6619	7	0	0	6	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0007	6615	7	0	1	6	0	0	copy fasta	FOXN3	chr14	89151177	89422233