JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
FOXN3_chr14_89151177_89422233	0/0	t0008	6618	7	0	0	7	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0009	6616	7	0	0	7	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0010	6617	6	1	1	4	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0011	6601	5	5	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0012	6625	5	1	3	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0013	6623	4	0	0	4	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0014	6603	4	4	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0015	6619	3	0	1	0	2	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0016	6613	3	3	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0017	6627	3	0	2	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0018	6623	3	0	2	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0019	6624	2	0	0	1	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0020	6602	2	1	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0021	6627	2	1	0	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0022	6627	2	0	0	2	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0023	6621	2	2	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0024	6605	2	0	1	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0025	6603	2	0	0	2	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0026	6599	2	0	0	2	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0027	6616	2	0	0	0	2	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0028	6609	2	2	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0029	6619	2	0	2	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0030	6616	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0031	6614	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0032	6607	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0033	6613	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0034	6627	1	0	0	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0035	6615	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0036	6630	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0037	6615	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0038	6611	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0039	6613	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0040	6625	1	0	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0041	6623	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0042	6621	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0043	6635	1	0	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0044	6629	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0045	6629	1	0	0	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0046	6629	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0047	6627	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0048	6626	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0049	6625	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0050	6625	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0051	6625	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0052	6625	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0053	6625	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0054	6624	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0055	6624	1	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0056	6623	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0057	6623	1	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233