JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXN3_chr14_89151177_89422233	0/0	t0058	6623	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0059	6622	1	0	0	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0060	6621	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0061	6620	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0062	6619	1	0	0	0	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0063	6619	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0064	6619	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0065	6617	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0066	6615	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0067	6615	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0068	6615	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0069	6613	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0070	6613	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0071	6638	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0072	6636	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0073	6636	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0074	6626	1	0	0	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0075	6624	1	0	0	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0076	6623	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0077	6621	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0078	6620	1	0	0	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0079	6619	1	0	0	1	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0080	6617	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0081	6615	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0082	6615	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0083	6615	1	0	0	0	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0084	6615	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0085	6614	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0086	6613	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0087	6611	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0088	6607	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0089	6605	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0090	6603	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0091	6631	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0092	6629	1	0	0	0	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0093	6629	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0094	6625	1	0	1	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0095	6621	1	0	0	0	0	1	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0096	6621	1	0	0	0	1	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	0/0	t0097	6629	1	1	0	0	0	0	copy fasta	FOXN3	chr14	89151177	89422233
FOXN4_chr12_109272978_109314284	1/1	t0001	1863	183	58	35	53	7	28	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0002	1863	116	11	32	53	11	9	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0003	1863	19	4	0	13	0	2	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0004	1863	17	3	0	12	0	2	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0005	1863	6	2	0	4	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0006	1863	5	0	0	5	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0007	1863	4	4	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0008	1863	3	3	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0009	1863	2	0	0	2	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0010	1863	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284