JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXN4_chr12_109272978_109314284	0/0	t0011	1863	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0012	1863	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0013	1863	1	0	0	1	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0014	1863	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0015	1863	1	0	1	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0016	1863	1	0	0	1	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0017	1863	1	0	0	1	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0018	1863	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0019	1863	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0020	1863	1	0	0	0	0	1	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0021	1863	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	t0022	1863	1	0	0	1	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXO1_chr13_40550667_40671641	0/0	t0001	3812	116	25	20	56	3	12	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	1/0	t0002	3812	85	26	20	22	8	8	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0003	3812	71	1	6	60	0	4	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0004	3812	50	6	7	29	3	5	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0005	3813	13	13	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0006	3813	9	1	6	0	1	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0007	3813	4	0	0	4	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0008	3812	4	4	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0009	3812	4	0	0	4	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0010	3812	3	0	0	2	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0011	3812	3	0	0	2	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0012	3812	2	0	0	2	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0013	3812	2	2	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0014	3812	2	0	2	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0015	3811	2	0	2	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0016	3813	2	0	2	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0017	3812	2	2	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0018	3812	1	0	0	0	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0019	3811	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/1	t0020	3812	1	0	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0021	3812	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0022	3812	1	0	0	0	1	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0023	3811	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0024	3811	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0025	3813	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0026	3812	1	0	0	0	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0027	3812	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0028	3812	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0029	3812	1	0	1	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0030	3812	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0031	3812	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0032	3812	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0033	3812	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0034	3812	1	0	0	0	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0035	3811	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0036	3812	1	0	0	0	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	t0037	3812	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO3B_chr17_18662629_18687314	0/0	t0001	4987	162	28	21	89	7	17	copy fasta	FOXO3B	chr17	18662629	18687314