JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXO3B_chr17_18662629_18687314	0/1	t0002	4985	100	9	24	50	4	12	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0003	4985	32	1	1	29	0	1	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0004	4987	20	10	6	0	1	3	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0005	4987	19	2	6	5	0	6	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0006	4984	13	13	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0007	4987	12	2	2	6	0	2	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	1/0	t0008	4987	11	0	6	0	2	2	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0009	4985	7	0	3	3	0	1	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0010	4987	6	0	0	6	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0011	4984	5	5	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0012	4984	4	4	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0013	4987	4	0	0	4	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0014	4987	4	0	0	4	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0015	4985	4	4	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0016	4987	3	0	0	1	1	1	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0017	4984	3	3	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0018	4985	3	1	2	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0019	4984	3	2	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0020	4987	3	0	1	0	0	2	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0021	4987	2	0	0	2	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0022	4985	2	0	0	1	1	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0023	4987	2	0	2	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0024	4987	2	0	0	2	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0025	4985	2	1	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0026	4985	2	2	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0027	4985	2	2	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0028	4984	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0029	4985	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0030	4987	1	0	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0031	4988	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0032	4987	1	0	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0033	4987	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0034	4987	1	0	0	0	0	1	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0035	4987	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0036	4987	1	0	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0037	4987	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0038	4988	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0039	4987	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0040	4987	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0041	4984	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0042	4984	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0043	4984	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0044	4984	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0045	4985	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0046	4987	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0047	4987	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0048	4985	1	0	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0049	4985	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0050	4987	1	0	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	t0051	4984	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314