JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXO3_chr6_108555917_108689774	0/0	t0001	5277	83	7	19	36	9	12	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/1	t0002	5275	53	24	12	8	2	6	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0003	5276	49	9	1	30	3	6	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0004	5275	8	7	1	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0005	5272	7	6	0	1	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0006	5276	7	3	0	3	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0007	5275	7	6	1	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0008	5278	6	1	1	4	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0009	5272	4	4	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0010	5275	4	4	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0011	5275	4	4	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0012	5276	3	0	0	3	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0013	5275	3	3	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0014	5277	2	1	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0015	5276	2	0	0	2	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0016	5276	2	0	0	1	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0017	5276	2	0	0	2	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0018	5277	2	0	1	0	1	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0019	5276	2	0	0	2	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0020	5275	2	2	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0021	5276	2	2	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0022	5272	1	1	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0023	5277	1	0	1	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0024	5276	1	0	0	1	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0025	5276	1	0	0	1	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0026	5277	1	0	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0027	5276	1	0	0	0	1	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0028	5276	1	0	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0029	5277	1	0	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0030	5277	1	0	1	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0031	5276	1	0	0	1	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0032	5277	1	0	0	1	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0033	5275	1	1	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0034	5276	1	1	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0035	5276	1	0	1	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0036	5277	1	0	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	1/0	t0037	5275	1	0	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0038	5275	1	0	1	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0039	5275	1	0	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0040	5275	1	0	1	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0041	5276	1	0	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0042	5277	1	0	1	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0043	5275	1	1	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0044	5276	1	1	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	t0045	5277	1	0	0	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO4_chrX_71090851_71108532	1/0	t0001	2127	223	69	35	89	6	23	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0002	2127	37	0	19	15	0	3	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0003	2127	7	7	0	0	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0004	2127	5	0	0	5	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0005	2128	4	1	0	2	0	1	copy fasta	FOXO4	chrX	71090851	71108532