JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXO4_chrX_71090851_71108532	0/0	t0006	2127	4	0	2	2	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0007	2128	2	0	0	1	0	1	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/1	t0008	2127	2	0	0	0	1	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0009	2129	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0010	2128	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0011	2128	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0012	2127	1	0	1	0	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0013	2127	1	1	0	0	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0014	2127	1	0	0	0	0	1	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0015	2129	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0016	2127	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0017	2126	1	0	1	0	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0018	2127	1	0	0	0	0	1	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	t0019	2129	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXP1_chr3_70949708_71588728	0/0	t0001	5141	3	3	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	1/0	t0002	5144	3	1	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0003	5139	2	2	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0004	5141	2	2	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0005	5153	2	2	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0006	5154	2	2	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0007	5160	2	2	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0008	5142	2	1	0	0	1	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0009	5144	2	1	0	0	0	1	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/1	t0010	5142	2	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0011	5148	1	0	0	0	0	1	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0012	5139	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0013	5140	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0014	5148	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0015	5159	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0016	5142	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0017	5146	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0018	5144	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0019	5143	1	0	0	0	1	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0020	5140	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0021	5134	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0022	5157	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0023	5140	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0024	5140	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0025	5147	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0026	5134	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0027	5140	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0028	5152	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0029	5152	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0030	5152	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0031	5154	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0032	5156	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0033	5151	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0034	5153	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0035	5153	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0036	5152	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728