JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXP1_chr3_70949708_71588728	0/0	t0037	5142	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0038	5155	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0039	5155	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0040	5151	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0041	5161	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0042	5145	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0043	5155	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0044	5130	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0045	5146	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0046	5141	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0047	5148	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0048	5143	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0049	5154	1	0	0	1	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0050	5146	1	0	0	0	0	1	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0051	5143	1	0	0	1	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0052	5145	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0053	5144	1	0	0	0	0	1	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0054	5141	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0055	5141	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0056	5140	1	0	0	0	0	1	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0057	5139	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0058	5134	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0059	5143	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0060	5141	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0061	5154	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0062	5148	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0063	5149	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0064	5142	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0065	5152	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0066	5145	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0067	5143	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0068	5142	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0069	5141	1	0	0	0	0	1	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0070	5141	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0071	5149	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0072	5148	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0073	5144	1	0	0	0	0	1	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0074	5143	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0075	5143	1	0	1	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0076	5152	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0077	5153	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0078	5145	1	0	0	0	0	1	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0079	5144	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0080	5145	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0081	5145	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0082	5153	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0083	5159	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	0/0	t0084	5140	1	1	0	0	0	0	copy fasta	FOXP1	chr3	70949708	71588728
FOXP2_chr7_114409815_114698765	1/0	t0001	4396	44	20	10	4	2	7	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0002	4395	30	8	3	16	0	3	copy fasta	FOXP2	chr7	114409815	114698765