JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXP2_chr7_114409815_114698765	0/0	t0003	4396	28	1	9	13	2	3	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/1	t0004	4393	24	3	8	3	3	6	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0005	4396	10	9	1	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0006	4397	10	9	1	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0007	4393	2	0	0	0	0	2	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0008	4394	2	0	1	0	0	1	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0009	4397	2	2	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0010	4391	1	0	0	0	1	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0011	4394	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0012	4393	1	0	0	0	0	1	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0013	4396	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0014	4396	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0015	4397	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0016	4396	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0017	4393	1	0	0	1	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0018	4394	1	0	0	1	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0019	4394	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0020	4393	1	0	0	1	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0021	4393	1	0	0	0	0	1	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0022	4395	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0023	4395	1	0	0	0	0	1	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0024	4395	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0025	4395	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0026	4395	1	0	0	0	0	1	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0027	4396	1	0	0	1	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0028	4396	1	0	1	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0029	4397	1	0	0	1	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0030	4397	1	0	0	1	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	t0031	4397	1	1	0	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP3_chrX_49245438_49269710	1/1	t0001	969	291	70	50	127	10	32	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	t0002	969	2	2	0	0	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	t0003	970	1	0	1	0	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	t0004	968	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	t0005	969	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	t0006	969	1	0	1	0	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	t0007	970	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	t0008	968	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP4_chr6_41541381_41607384	1/0	t0001	3952	143	20	37	60	8	17	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/1	t0002	3952	35	18	3	11	0	2	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0003	3952	30	1	6	21	0	2	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0004	3952	23	9	4	8	1	1	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0005	3953	13	1	4	8	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0006	3952	11	0	5	0	2	4	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0007	3952	10	0	4	4	1	1	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0008	3958	9	6	1	1	1	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0009	3952	8	0	4	0	2	2	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0010	3952	6	2	0	1	0	3	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0011	3951	5	5	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0012	3952	5	3	0	1	0	1	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0013	3953	4	2	0	2	0	0	copy fasta	FOXP4	chr6	41541381	41607384