Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKR1D1_chr7_138071459_138123305	0/0	t0057	1704	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0058	1704	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0059	1704	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0060	1704	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0061	1704	1	1	0	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0062	1704	1	1	0	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0063	1704	1	1	0	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0064	1705	1	1	0	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0065	1704	1	1	0	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0066	1704	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	t0067	1704	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1E2_chr10_4821207_4853062	0/1	t0001	651	230	32	50	112	10	25	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	1/0	t0002	651	61	42	6	2	0	10	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0003	652	27	1	3	23	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0004	651	13	4	9	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0005	651	8	2	3	0	0	3	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0006	643	4	4	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0007	651	3	0	2	0	0	1	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0008	651	3	0	0	3	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0009	651	2	2	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0010	659	2	2	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0011	651	1	1	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0012	660	1	0	0	1	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0013	651	1	0	0	0	0	1	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0014	652	1	0	0	1	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	t0015	651	1	0	1	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR7A2_chr1_19298965_19317144	1/1	t0001	281	459	94	82	213	18	50	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	t0002	281	1	0	0	1	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A3_chr1_19277573_19293770	1/1	t0001	220	414	92	78	184	16	42	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	t0002	220	10	0	0	8	0	2	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	t0003	220	4	0	2	0	0	2	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	t0004	220	2	1	0	1	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	t0005	220	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	t0006	196	1	0	0	1	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKT1S1_chr19_49864039_49882355	1/1	t0001	1005	324	85	59	126	13	39	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0002	1005	27	1	4	16	1	5	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0003	1005	25	0	9	15	0	1	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0004	1005	19	0	0	19	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0005	1005	7	0	0	7	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0006	1003	5	5	0	0	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0007	1005	4	0	0	4	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0008	1005	3	0	0	2	0	1	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0009	1005	1	1	0	0	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0010	1005	1	0	0	0	0	1	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0011	1005	1	0	0	1	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0012	1005	1	0	0	1	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0013	1005	1	0	0	0	0	1	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	t0014	1005	1	0	0	1	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1_chr14_104764349_104800748	0/1	t0001	1516	305	46	72	137	14	35	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0002	1516	19	14	5	0	0	0	copy fasta	AKT1	chr14	104764349	104800748