JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXP4_chr6_41541381_41607384	0/0	t0014	3952	4	0	4	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0015	3952	3	3	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0016	3952	3	3	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0017	3953	3	0	0	3	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0018	3952	3	0	0	0	0	3	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0019	3952	2	0	0	0	0	2	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0020	3952	2	2	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0021	3952	2	2	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0022	3952	2	2	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0023	3952	2	0	0	2	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0024	3952	2	0	0	0	2	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0025	3952	2	0	0	0	1	1	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0026	3952	1	0	1	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0027	3963	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0028	3952	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0029	3952	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0030	3952	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0031	3952	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0032	3952	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0033	3952	1	0	0	0	0	1	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0034	3952	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0035	3953	1	0	0	0	0	1	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0036	3953	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0037	3953	1	0	1	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0038	3959	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0039	3953	1	0	1	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0040	3952	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0041	3952	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0042	3952	1	0	0	0	0	1	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0043	3952	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0044	3952	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0045	3952	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0046	3952	1	0	1	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0047	3953	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0048	3952	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	t0049	3952	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXQ1_chr6_1307098_1319758	0/1	t0001	1450	155	30	44	49	12	19	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0002	1450	120	21	19	58	5	17	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	1/0	t0003	1450	62	14	10	34	1	2	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0004	1450	27	1	3	22	0	1	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0005	1450	8	0	0	8	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0006	1447	7	7	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0007	1450	6	6	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0008	1450	2	2	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0009	1450	2	2	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0010	1450	2	0	0	2	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0011	1450	2	0	0	2	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0012	1450	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0013	1450	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0014	1450	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758