JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXQ1_chr6_1307098_1319758	0/0	t0015	1403	1	0	0	0	0	1	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0016	1450	1	0	1	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0017	1450	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0018	1450	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0019	1450	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0020	1447	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0021	1450	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0022	1450	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0023	1450	1	0	1	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	t0024	1450	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXR1_chr11_118966761_118986287	1/1	t0001	223	427	94	75	196	13	47	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	t0002	223	2	0	1	0	1	0	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	t0003	223	1	0	0	0	0	1	copy fasta	FOXR1	chr11	118966761	118986287
FOXR2_chrX_55618400_55631192	1/1	t0001	1858	285	56	51	135	8	33	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0002	1858	14	0	4	10	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0003	1858	11	8	3	0	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0004	1858	3	3	0	0	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0005	1858	3	0	0	3	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0006	1858	2	2	0	0	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0007	1858	1	1	0	0	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0008	1858	1	0	0	0	0	1	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0009	1858	1	1	0	0	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0010	1858	1	0	0	1	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0011	1857	1	0	0	1	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0012	1856	1	1	0	0	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	t0013	1858	1	0	0	1	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXRED1_chr11_126264154_126283126	0/0	t0001	491	152	4	25	95	5	23	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/1	t0002	491	115	21	15	60	3	15	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	1/0	t0003	491	66	42	17	0	4	2	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	t0004	491	36	6	13	10	2	5	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	t0005	491	12	12	0	0	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	t0006	491	5	5	0	0	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	t0007	491	1	1	0	0	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	t0008	491	1	0	0	0	0	1	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	t0009	491	1	1	0	0	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	t0010	510	1	0	0	1	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED2_chr22_36482190_36512040	0/0	t0001	2850	94	16	32	18	11	17	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	1/1	t0002	2851	86	2	9	61	0	12	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0003	2854	28	0	5	23	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0004	2851	22	19	3	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0005	2848	20	20	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0006	2850	15	11	3	0	1	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0007	2853	13	1	0	9	0	3	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0008	2852	6	0	0	4	0	2	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0009	2848	4	4	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0010	2853	4	4	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0011	2848	3	3	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0012	2850	2	0	2	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0013	2850	2	2	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0014	2849	2	2	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040