JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FOXRED2_chr22_36482190_36512040	0/0	t0015	2849	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0016	2850	1	0	1	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0017	2850	1	0	1	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0018	2850	1	0	1	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0019	2850	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0020	2851	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0021	2851	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0022	2850	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0023	2850	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0024	2851	1	0	0	0	0	1	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0025	2851	1	0	0	0	0	1	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0026	2851	1	0	1	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0027	2851	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0028	2853	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0029	2849	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0030	2849	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0031	2853	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0032	2854	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	t0033	2854	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXS1_chr20_31839303_31850604	1/1	t0001	310	298	50	55	140	12	39	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	t0002	310	79	45	21	0	6	7	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	t0003	310	2	2	0	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	t0004	310	1	1	0	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FPGS_chr9_127797882_127819081	0/0	t0001	521	194	26	40	113	4	11	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	1/1	t0002	521	183	47	31	68	8	27	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	t0003	519	25	21	0	1	0	3	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	t0004	521	1	0	0	0	0	1	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	t0005	521	1	0	0	0	0	1	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	t0006	521	1	0	1	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	t0007	521	1	0	0	0	0	1	copy fasta	FPGS	chr9	127797882	127819081
FPGT_chr1_74193242_74213702	0/1	t0001	2907	138	18	17	75	5	22	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0002	2907	74	7	33	19	7	8	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0003	2907	67	21	11	29	0	6	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	1/0	t0004	2908	47	29	4	5	2	6	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0005	2907	7	0	0	7	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0006	2907	6	0	0	6	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0007	2907	6	0	2	4	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0008	2906	4	4	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0009	2908	4	3	1	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0010	2904	3	0	0	3	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0011	2907	3	0	1	0	0	2	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0012	2907	3	0	0	3	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0013	2908	2	0	0	2	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0014	2907	2	2	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0015	2908	1	0	1	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0016	2907	1	1	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0017	2908	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0018	2907	1	1	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0019	2907	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0020	2907	1	0	1	0	0	0	copy fasta	FPGT	chr1	74193242	74213702