JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FPGT_chr1_74193242_74213702	0/0	t0021	2908	1	0	0	0	0	1	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0022	2908	1	0	0	0	0	1	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0023	2907	1	0	1	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0024	2907	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0025	2907	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0026	2907	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0027	2907	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	t0028	2907	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPR1_chr19_51740773_51756878	0/1	t0001	245	361	76	72	153	15	44	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	1/0	t0002	246	100	3	13	78	1	4	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	t0003	244	14	14	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	t0004	245	8	5	1	2	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	t0005	246	2	2	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	t0006	245	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR2_chr19_51756180_51775531	1/1	t0001	883	427	86	77	199	17	46	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	t0002	883	23	0	3	16	1	3	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	t0003	883	11	10	1	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	t0004	883	5	0	0	5	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	t0005	883	2	2	0	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	t0006	883	1	0	0	0	0	1	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	t0007	883	1	0	1	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	t0008	883	1	1	0	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	t0009	883	1	1	0	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR3_chr19_51790157_51831190	0/0	t0001	1566	193	40	36	90	9	18	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0002	1566	77	2	21	47	2	5	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0003	1566	26	2	1	15	3	5	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	1/1	t0004	1566	23	12	7	1	1	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0005	1566	18	13	1	4	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0006	1566	16	2	3	10	0	1	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0007	1566	15	3	3	3	1	5	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0008	1566	7	0	0	5	0	2	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0009	1566	5	5	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0010	1566	5	4	0	1	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0011	1566	4	0	0	0	0	4	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0012	1566	4	4	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0013	1566	3	3	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0014	1566	3	3	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0015	1566	2	2	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0016	1566	2	0	1	0	0	1	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0017	1566	2	2	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0018	1566	1	0	1	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0019	1566	1	0	1	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0020	1566	1	1	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0021	1566	1	0	0	1	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0022	1566	1	0	1	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0023	1566	1	0	1	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0024	1566	1	0	0	1	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0025	1566	1	0	0	0	0	1	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0026	1566	1	0	0	1	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	t0027	1566	1	0	0	1	0	0	copy fasta	FPR3	chr19	51790157	51831190